opencadd.structure.superposition.sequences.matrices
- opencadd.structure.superposition.sequences.matrices(name)[source]
A SubstitutionMatrix maps each possible pairing of a symbol of a first alphabet with a symbol of a second alphabet to a score (int)
- Parameters
name (string) – Name of the matrix which is loaded from the internal matrix database. If the name of Substitution Matrix could not be found, the default SubstitutionMatrix will be BLOSUM62.
- Returns
The class uses a 2-D (m x n) ndarray, where each element stores the score for a symbol pairing, indexed by the symbol codes of the respective symbols in an m-length alphabet 1 and an n-length alphabet 2
- Return type
SubstitutionMatrix