opencadd.structure.superposition.sequences

Description

Utilities for sequence alignment

Functions

fasta2select(fastafilename[, ref_resids, ...])	Return selection strings that will select equivalent residues.
matrices(name)	A SubstitutionMatrix maps each possible pairing of a symbol of a first alphabet with a symbol of a second alphabet to a score (int)
sequence_alignment(seq1, seq2, matrix, gap)	Perform a global alignment, based on the Needleman-Wunsch algorithm